build.xml and juicebox.properties (for compilation from source).Juicebox.jar, Juicebox_CLT.jar, juicebox, and juicebox.bat (executables).The files included in this distribution are as follows: KR (Balanced) normalization at 2.5Mb resolution. The file chr1.txt contains the observed matrix of chromosome 1 with.Juicebox.bat dump observed KR data/test.hic 1 1 BP 2500000 > chr1.txt Juicebox dump observed KR data/test.hic 1 1 BP 2500000 > chr1.txt The hover text on the right should read:.Move your mouse until it hovers over the bin at 100mb x 100mb.and thenĬlick the Local button at the bottom of the dialog. Juicebox.bat pre data/ data/test.hic hg19 Now, to create your own map from your own data, go to the command line.Map to see the features lined up with the tracks. On the heat map and select Enable straight edge. You can line up what you see in the heat map with the tracks.GM12878 and select the H3K36me3 track and the CTCF track.
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